PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05774.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 419aa    MW: 47332.1 Da    PI: 9.5812
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05774.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEde+lv ++k +G g+W++ +r  g+ R++k+c++rw +yl
  Rsa1.0_05774.1_g00001.1 14 KGAWTKEEDERLVSYIKSHGEGCWRSLPRAAGLLRCGKSCRLRWINYL 61
                             79******************************99************97 PP

2Myb_DNA-binding54.23.4e-1767111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg++T +Ede +++++ +lG++ W++Ia++++ gRt++++k++w+++
  Rsa1.0_05774.1_g00001.1  67 RGNFTHDEDEVIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                              89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.094961IPR017930Myb domain
SuperFamilySSF466897.11E-2912108IPR009057Homeodomain-like
SMARTSM007172.2E-131363IPR001005SANT/Myb domain
PfamPF002496.9E-151461IPR001005SANT/Myb domain
CDDcd001677.14E-101661No hitNo description
PROSITE profilePS5129428.25462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2765116IPR009057Homeodomain-like
SMARTSM007173.5E-1666114IPR001005SANT/Myb domain
PfamPF002492.4E-1567111IPR001005SANT/Myb domain
CDDcd001671.04E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009751Biological Processresponse to salicylic acid
GO:1900384Biological Processregulation of flavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGRSPCCEKE HMNKGAWTKE EDERLVSYIK SHGEGCWRSL PRAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF THDEDEVIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLLSKG  120
IDPNTHRSIN AAKDHDLKKT GDQIVKDVSF GSLFEKTEKS EEQKQNKNQK QNLINGFVCK  180
EERVEHHPVV VVVQEKICPE LNLELRISPP WQNKNYDDQT KERFAYTASH LYVENGMESS  240
SDTAKCQTED SSSISHSSLD ISSISSIGYD FLGLNTRIKA QYVNLDPTTG ASSSVGKRFT  300
AVSSATWVRI PTTGELTFRH RQGQKTDMHE SSSDEDPSPK KARANTKIRG QESDERLILF  360
PLGVVVVRRP MAVLVASSMM VRRITTVFGV FLVITVRTVM TVMVVFTVAV AVAFLLVVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756520.0KM975652.1 Brassica napus MYB transcription factor 7.1 (MYB7.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681926.11e-163PREDICTED: transcription factor MYB32-like
RefseqXP_013736822.11e-163PREDICTED: transcription factor MYB32-like
SwissprotO496081e-107MYB32_ARATH; Transcription factor MYB32
TrEMBLA0A078ERT31e-163A0A078ERT3_BRANA; BnaA03g39240D protein
STRINGBra013055.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-128myb domain protein 7